bionumpy
1.0.7
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Getting started with BioNumPy
A 10-minute introduction to BioNumPy
Using BioNumPy in your existing project
Tutorials
Filtering FASTQ reads
Working with BAM-files
Getting read pileup inside peaks (intervals)
FastQC-like quality-checking of FASTQ files
Computing GC content inside genes
Using NumPy functionality
Position Weight Matrix
Simulating sequence datasets
Computing the similarity between two BED-files
Extracting kmers around snps
BioNumPy Concepts
Reading files
Working with big data
Encodings
Supported file formats
Implementing a new file format
Sequences
Intervals
Working with Multiple Files/Data Sources
Broadcastable Functions
API documentation
BnpDataclass
Genome arithmetics
Genomic Data
IO
Sequences
Streams
Other
Developer guide
Getting started and how to contribute
Setting up your development environment
How we do testing in BioNumPy
Making examples
Writing documentation
Design principles and code overview
Implementing encodings
BioNumPy manuscript
bionumpy
Developer guide
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Developer guide
Getting started and how to contribute
Setting up your development environment
How we do testing in BioNumPy
Making examples
Writing documentation
Design principles and code overview
Implementing encodings